Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs6763882 chr3:52354772 A/G 6.23E-7 134 50.87 37.32 42.03 KM Plot
TGCT rs6765863 chr3:172562687 C/T 5.46E-7 134 24.15 46.3 42.1 KM Plot
TGCT rs67763033 chr7:76517677 A/G 0.000102 128 41.97 49.93 10.62 KM Plot
TGCT rs6776317 chr3:172490552 A/G 5.01E-5 134 47.38 37.53 42.1 KM Plot
TGCT rs67814714 chr7:76517422 T/C 8.09E-5 129 43.53 49.93 10.62 KM Plot
TGCT rs6790033 chr3:172547955 C/G 4.91E-5 134 47.38 41.92 42.03 KM Plot
TGCT rs6806417 chr3:134211446 C/T 6.76E-5 134 46.3 38.2 26.8 KM Plot
TGCT rs68172346 chr4:58371037 T/C 0 132 42.18 53.83 0.5 KM Plot
TGCT rs6859338 chr5:1826772 C/T 8.06E-6 131 42.18 45.83 24.73 KM Plot
TGCT rs6862914 chr5:1795989 A/G 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs6864281 chr5:1820665 G/A 5.54E-6 134 42.27 41.97 24.73 KM Plot
TGCT rs6868515 chr5:1799215 G/C 1.89E-5 132 42.27 43.9 20.6 KM Plot
TGCT rs6871796 chr5:133735365 C/T 1.67E-9 134 42.03 51.18 9.02 KM Plot
TGCT rs6873986 chr5:1834277 A/G 3.06E-10 134 18.4 51.67 41.33 KM Plot
TGCT rs6880885 chr5:1795762 G/A 4.04E-7 133 42.27 45.83 20.6 KM Plot